Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: A scoring system is employed to indicate the number of IMGT/LIGM-DB reference sequences and other sequences from the literature in which an IG or TR gene allele has been identified and annotated.

A single star ()
indicates that an IG or TR gene allele is annotated in the reference sequence only.
Two stars ()
indicate that an IG or TR gene allele is annotated in its reference sequence and in one sequence from the literature.
Three stars ()
indicate that an IG or TR gene allele is annotated in its reference sequence and in at least two sequences from the literature.
In the Excel file, the stars are represented by the plus symbol (+).
Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.

This article was also used for annotation:
Tanaka, A et al. “Sequence and diversity of bovine T-cell receptor beta-chain genes.” Immunogenetics vol. 32,4 (1990): 263-71. PMID: 1700762

Gene table of bovine (Bos taurus) TRBC IMGT group:
IMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		ExonsR T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesBreedAccession
numbers		Positions
in the sequence		Secondary
accession
numbers		Clone namesBreedAccession
numbers		Positions
in the sequence
TRBC1 TRBC1*01 F 4 EX1 CM008171.2 Hereford IMGT000084 MAP 605603-605992
TRBC1 TRBC1*01 F 4 EX2 CM008171.2 Hereford IMGT000084 MAP 606660-606677
TRBC1 TRBC1*01 F 4 EX3 CM008171.2 Hereford IMGT000084 MAP 606834-606940
TRBC1 TRBC1*01 F 4 EX4 CM008171.2 Hereford IMGT000084 MAP 607266-607283
TRBC1 TRBC1*02 F 4 EX1 AF453325 [1] 22605-22994
TRBC1 TRBC1*02 F 4 EX2 AF453325 [1] 23664-23681
TRBC1 TRBC1*02 F 4 EX3 AF453325 [1] 23838-23944
TRBC1 TRBC1*02 F 4 EX4 AF453325 [1] 24269-24286
TRBC2 TRBC2*01 F 4 EX1 CM008171.2 Hereford IMGT000084 MAP 624260-624649
TRBC2 TRBC2*01 F 4 EX2 CM008171.2 Hereford IMGT000084 MAP 625326-625343
TRBC2 TRBC2*01 F 4 EX3 CM008171.2 Hereford IMGT000084 MAP 625498-625604
TRBC2 TRBC2*01 F 4 EX4 CM008171.2 Hereford IMGT000084 MAP 625878-625895
TRBC2 TRBC2*02 F 4 EX1 AF453325 [1] 41269-41658
TRBC2 TRBC2*02 F 4 EX2 AF453325 [1] 42335-42352
TRBC2 TRBC2*02 F 4 EX3 AF453325 [1] 42507-42613
TRBC2 TRBC2*02 F 4 EX4 AF453325 [1] 42887-42904
TRBC3 TRBC3*01 F 4 EX1 CM008171.2 Hereford IMGT000084 MAP 615431-615820
TRBC3 TRBC3*01 F 4 EX2 CM008171.2 Hereford IMGT000084 MAP 616230-616247
TRBC3 TRBC3*01 F 4 EX3 CM008171.2 Hereford IMGT000084 MAP 616409-616515
TRBC3 TRBC3*01 F 4 EX4 CM008171.2 Hereford IMGT000084 MAP 616842-616859
TRBC3 TRBC3*02 F 4 EX1 AF453325 [1] 32432-32821
TRBC3 TRBC3*02 F 4 EX2 AF453325 [1] 33230-33247
TRBC3 TRBC3*02 F 4 EX3 AF453325 [1] 33409-33515
TRBC3 TRBC3*02 F 4 EX4 AF453325 [1] 33842-33859
IMGT references: ↑
  1. Conrad M.L. et al., Genomic sequencing of the bovine T cell receptor beta locus, Vet. Immunol. Immunopathol, vol. 87, no. 3-4, 2002, pp. 439-441. DOI: 10.1016/S0165-2427(02)00093-4